Principle of RNA sequencing
Application in oncology
Application in ophthalmology
Transcriptome databases
Ocular transcriptome databases
Database | iSyTE 2.0 | Express | retina.tigem.it | Spectacle | UCSC Cell Browser | Broad Institute Single Cell Portal | Eye in a Disk | Ocular Tissue Database | Human Eye Transcriptome Atlas |
---|---|---|---|---|---|---|---|---|---|
Healthy tissue | Lens | Lens Retina | Retina | Retina RPE/Choroid | Retina RPE/Choroid Cornea | Cornea Iris TMW Sclera Retina RPE/Choroid | Cornea Lens Retina RPE/Choroid | Cornea Sclera TMW Iris Ciliary body Lens Optic nerve head Optic nerve Retina RPE/Choroid | Conjunctiva Cornea Lid Lacrimal gland Optic nerve Retina periphery Retina center RPE/Choroid ILM retinal Microglia Hyalocytes |
Diseased tissue | – | – | – | Autoimmune retinopathy RPE nAMD | RPE nAMD | – | Retina AMD | – | Conj. SCC Conj. papilloma Conj. melanoma Pterygium CNV-membrane Epiretinal membrane PDR membrane PVR epiretinal PVR subretinal |
Tissue types | 1 | 2 | 1 | 4 | 4 | 6 | 5 | 10 | 20 |
Samples | 42 | 56 | 50 | 23 | 23 | 18 | 829 | 6 | 139 |
Species | Murine | Murine | Human | Human | Human | Human, porcine | Human | Human | Human |
Tissue source | Mouse | Mouse | Postmortal | Postmortal | Postmortal | Postmortal | Postmortal & stem cells | Postmortal | Surgical specimens |
Method | Microarray | RNA-Seq | RNA-Seq | scRNA-Seq | scRNA-Seq | scRNA-Seq | RNA-Seq | Microarray | RNA-Seq |
Methodological homogeneitya | No | No | Yes | No | No | No | No | Yes | Yes |
Comparative analysisb | Yes | Yes | Yes | No | No | No | Yes | Yes | Yes |
Link | |||||||||
Reference | [11] | [5] | [18] | [29] | [24] | – | [25] | [30] | [33] |